I've got a pretty good book on superchargers by Corky Bell. He basically says to design your system for minimal backpressure. He recommends only 1 psi, which is impossible w/ cats, etc. So realistically he recommends that you shoot for less than 5 psi total back pressure, as measured before your cats at full boost, WOT and redline rpm's. I have another book by Dave Vizard that concurs with this. I don't want to start the whole "must have BP for low torque" debate, but it is true that minimal BP is best for making more power, but ONLY if your fuel system can keep you in the proper a/f ratio range across the board at WOT, say 12.5-13:1. Tough to say if these modern ECM controlled injection systems like ours could keep up or not. SC kits will probably include upsized injectors, anyway.
I've been thinking for a while now about checking my BP after my cats at the y-pipe to see what kind of pressure I'm running there. Wouldn't give me total BP, but I have to leave the cats in anyway, so I'm not worried about it right now. Then I was thinking about adding a couple other taps downstream to check press drop across my reso and muffler just for grins, since this is an area I can have some control over.
Your cats are gonna be the most restrictive component anyway, so I doubt you'd gain much by going larger than single 3", dual 2.25" pipe. Maybe with headers and no cats!

I would just keep the Banks until you get the SC, and then measure your BP and see where you're at....may surprise ya.
Corky states in his book that you gain between 1.25- 1.5% hp for every 1 psi reduction it BP. He is the Master.....I am not worthy! Good Luck.