I have an Advantage Tri-Fold soft cover and it works fine with the track system. Easy to install and remove with one person. It's about 7 years old and holding up well. Cargo in the bed stays dry during rain and car washes.
One major issue and I'm not sure if this affects all the soft tonneau covers, is that the cover can touch the back of the cab. Over time, the paint has rubbed away to bare metal. It's a small section that's only noticeable when the cover is removed.
When the cover is installed, before tightening things down you want it to be centered over the bed. It's possible to tighten it down when it's too far forward, back, left, right, etc. Over the years I've had it too far forward so that the cover touches the cab, allowing the paint to get rubbed away.