You should've done that sooner, but with a clean screen I'm sure all is well now.
You seriously need to learn the difference between "type" and "brand". Any brand will work as long as it says it covers matic J and/or S......Legally this must be true. Matic S isn't anything special.I would be more worried about the fluid going into the trans rather than dropping the pan to clean the screen. I didnt read your entire post as my eyes hurt a little bit right now, but most Multi-Vehicle ATF doesn't even support Matic J/S. Which could be the reason the transmission went bad in the first place. There has been a lot of controversy about ATF type, and most guys (like myself), wont run anything but Matic-S, and some guys use Valvoline or Amsoil and tend to have good luck, but using stuff that isnt even compatible is asking for trouble.